What happened with my apt?

vln0x · Sep 19th 2019

So after my hollydays i came back home and wanted to upgrade OMV. The GUI listed a bunch of updates but after trying to update via the GUI i got the "Something went wrong" window.
I then went on to try and update via console and was greeted by this:

Code

root@fvmnas:~# apt-get upgrade
Paketlisten werden gelesen... Fertig
Abhängigkeitsbaum wird aufgebaut.
Statusinformationen werden eingelesen.... Fertig
Paketaktualisierung (Upgrade) wird berechnet... Fertig
Die folgenden Pakete sind zurückgehalten worden:
  clamav-base clamav-daemon clamav-freshclam clamdscan zfs-dkms zfs-zed zfsutils-linux
Die folgenden Pakete werden aktualisiert (Upgrade):
  libglib2.0-dev
1 aktualisiert, 0 neu installiert, 0 zu entfernen und 7 nicht aktualisiert.
64 nicht vollständig installiert oder entfernt.
Es müssen noch 0 B von 2.983 kB an Archiven heruntergeladen werden.
Nach dieser Operation werden 0 B Plattenplatz zusätzlich benutzt.
Möchten Sie fortfahren? [J/n] y
(Lese Datenbank ... 334405 Dateien und Verzeichnisse sind derzeit installiert.)
Vorbereitung zum Entpacken von .../libglib2.0-dev_2.50.3-2+deb9u1_amd64.deb ...
Traceback (most recent call last):
  File "/usr/bin/py3clean", line 24, in <module>
    import logging
  File "/usr/lib/python3.5/logging/__init__.py", line 723, in <module>
    _handlers = weakref.WeakValueDictionary()  #map of handler names to handlers
  File "/usr/lib/python3.5/weakref.py", line 118, in __init__
    _atomic_removal(d, wr.key)
NameError: name '_atomic_removal' is not defined
dpkg: Warnung: Unterprozess altes pre-removal-Skript gab den Fehlerwert 1 zurück
dpkg: stattdessen wird Skript aus dem neuen Paket probiert ...
Traceback (most recent call last):
  File "/usr/bin/py3clean", line 24, in <module>
    import logging
  File "/usr/lib/python3.5/logging/__init__.py", line 723, in <module>
    _handlers = weakref.WeakValueDictionary()  #map of handler names to handlers
  File "/usr/lib/python3.5/weakref.py", line 118, in __init__
    _atomic_removal(d, wr.key)
NameError: name '_atomic_removal' is not defined
dpkg: Fehler beim Bearbeiten des Archivs /var/cache/apt/archives/libglib2.0-dev_2.50.3-2+deb9u1_amd64.deb (--unpack):
 Unterprozess neues pre-removal-Skript gab den Fehlerwert 1 zurück
Traceback (most recent call last):
  File "/usr/bin/py3compile", line 25, in <module>
    import logging
  File "/usr/lib/python3.5/logging/__init__.py", line 723, in <module>
    _handlers = weakref.WeakValueDictionary()  #map of handler names to handlers
  File "/usr/lib/python3.5/weakref.py", line 118, in __init__
    _atomic_removal(d, wr.key)
NameError: name '_atomic_removal' is not defined
dpkg: Fehler beim Aufräumen:
Unterprozess installiertes post-installation-Skript gab den Fehlerwert 1 zurück
Fehler traten auf beim Bearbeiten von:
 /var/cache/apt/archives/libglib2.0-dev_2.50.3-2+deb9u1_amd64.deb
Traceback (most recent call last):
  File "/usr/sbin/omv-mkaptidx", line 91, in <module>
    cache = apt.cache.Cache()
  File "/usr/lib/python3/dist-packages/apt/cache.py", line 83, in __init__
    self._weakref = weakref.WeakValueDictionary()
  File "/usr/lib/python3.5/weakref.py", line 118, in __init__
    _atomic_removal(d, wr.key)
NameError: name '_atomic_removal' is not defined
E: Sub-process /usr/bin/dpkg returned an error code (1)

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anybody got an idea what is going on and how i fix this mess?
helb would be appreciated

DHGE · Sep 19th 2019

I wonder why it is still not fixed...

I just setup a new ODROID hc2 and DLed the latest image from sourgeforge and ran into the same issue.

fix: (as root)

Bash

wget -O /usr/lib/python3.5/weakref.py https://raw.githubusercontent.com/python/cpython/9cd7e17640a49635d1c1f8c2989578a8fc2c1de6/Lib/weakref.py

I had to start over with etching an SD card since the unfinished dpkg -i process made my ssh logins impossible.

OOPS: seems to be still in the repos
After a dist-upgrade on my fresh install I hade to fix this again

KM0201 · Sep 19th 2019

Quote from DHGE
I wonder why it is still not fixed...

I just setup a new ODROID hc2 and DLed the latest image from sourgeforge and ran into the same issue.

fix: (as root)
Bash
wget -O /usr/lib/python3.5/weakref.py https://raw.githubusercontent.com/python/cpython/9cd7e17640a49635d1c1f8c2989578a8fc2c1de6/Lib/weakref.py
I had to start over with etching an SD card since the unfinished dpkg -i process made my ssh logins impossible.

OOPS: seems to be still in the repos
After a dist-upgrade on my fresh install I hade to fix this again
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Votdev doesn't "fix" things that aren't his to fix. It's a harmless python error. There's been multiple bug reports on this with the python devs... they've not fixed it yet (although it doesn't happen in OMV 5)

vln0x · Sep 19th 2019

Thanks you two
this part works againg
however now this comes up when trying to update

Code

zfsutils-linux : Conflicts: insserv (< 1.18) but 1.14.0-5.4+b1 is to be installed

is there anything i can do about it?

Greetings

KM0201 · Sep 19th 2019

Sorry, don't use ZFS

DHGE · Sep 19th 2019

@vln0x

you could force this via dpkg (although the error message sounds weird to me looking at the version numbers)

-->
https://www.debian.org/distrib/packages

BUT: I would not dare this with filesystem compnents

ryecoaaron · Sep 19th 2019

Remove insserv with apt-get purge insserv

Quote from DHGE

you could force this via dpkg (although the error message sounds weird to me looking at the version numbers)

No. Don't do this.

miamibits · Sep 20th 2019

Yesterday I upgraded OMV to 4.1.25-1 (kernel 4.14.144) and my Odroid HC2 went crazy, it appears that the board is rebooting continuously, just staying online for about 10 minutes.

Any clues on how to fix it?

macom · Sep 21st 2019

Try to check the log files.
If the time is not enough you can read the SD card with another Linux system.

vln0x · Sep 23rd 2019

Quote from ryecoaaron

Remove insserv with apt-get purge insserv
No. Don't do this.

hmm that does not seem to help:

Code

Die folgenden Pakete werden ENTFERNT:
  init* initscripts* insserv* omvextras-netrc* openmediavault* openmediavault-backup* openmediavault-clamav*
  openmediavault-omvextrasorg* openmediavault-remotemount* openmediavault-resetperms* openmediavault-usbbackup*
  openmediavault-virtualbox* openmediavault-zfs* systemd-sysv* sysv-rc*
Die folgenden NEUEN Pakete werden installiert:
  cgmanager libcgmanager0 libnih-dbus1 libnih1 systemd-shim
WARNUNG: Die folgenden essentiellen Pakete werden entfernt.
Dies sollte NICHT geschehen, außer Sie wissen genau, was Sie tun!
  init systemd-sysv (wegen init)
0 aktualisiert, 5 neu installiert, 15 zu entfernen und 20 nicht aktualisiert.
Es müssen 367 kB an Archiven heruntergeladen werden.
Nach dieser Operation werden 14,3 MB Plattenplatz freigegeben.
Sie sind im Begriff, etwas potentiell Schädliches zu tun.
Zum Fortfahren geben Sie bitte »Ja, tue was ich sage!« ein.

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it seems like it wants to remove the whole omv system...
any other clues?
greetings

ryecoaaron · Sep 24th 2019

zfs depends on it. I don't have zfs on most of my systems. What is the output of:

apt-get update
apt-cache policy zfsutils-linux

vln0x · Sep 25th 2019

Code

apt-get update


Holen:1 file:/var/cache/openmediavault/archives  InRelease
Ign:1 file:/var/cache/openmediavault/archives  InRelease
Holen:2 file:/var/cache/openmediavault/archives  Release
Ign:2 file:/var/cache/openmediavault/archives  Release
Holen:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Holen:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Holen:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Ign:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Holen:6 file:/var/cache/openmediavault/archives  Translation-de
Ign:6 file:/var/cache/openmediavault/archives  Translation-de
Holen:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Holen:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Holen:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Ign:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Holen:6 file:/var/cache/openmediavault/archives  Translation-de
Ign:6 file:/var/cache/openmediavault/archives  Translation-de
Holen:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Holen:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Holen:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Ign:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Holen:6 file:/var/cache/openmediavault/archives  Translation-de
Ign:6 file:/var/cache/openmediavault/archives  Translation-de
Holen:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Holen:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Holen:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Ign:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Holen:6 file:/var/cache/openmediavault/archives  Translation-de
Ign:6 file:/var/cache/openmediavault/archives  Translation-de
Holen:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Holen:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Holen:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Ign:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Holen:6 file:/var/cache/openmediavault/archives  Translation-de
Ign:6 file:/var/cache/openmediavault/archives  Translation-de
Holen:3 file:/var/cache/openmediavault/archives  Packages
Holen:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Holen:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Ign:5 file:/var/cache/openmediavault/archives  Translation-de_DE
Holen:6 file:/var/cache/openmediavault/archives  Translation-de
Ign:6 file:/var/cache/openmediavault/archives  Translation-de
OK:7 http://packages.openmediavault.org/public arrakis InRelease
Ign:8 http://ftp.halifax.rwth-aachen.de/debian stretch InRelease
Holen:9 http://security.debian.org stretch/updates InRelease [94,3 kB]
OK:10 http://ftp.halifax.rwth-aachen.de/debian stretch-updates InRelease
OK:11 http://ftp.halifax.rwth-aachen.de/debian stretch Release
OK:12 https://openmediavault.github.io/packages arrakis InRelease
Ign:13 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch InRelease
Holen:14 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch Release [4.389 B]
Holen:15 http://security.debian.org stretch/updates/main Sources [189 kB]
OK:14 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch Release
Holen:16 http://security.debian.org stretch/updates/main amd64 Packages [497 kB]
Holen:18 http://security.debian.org stretch/updates/main Translation-en [219 kB]
OK:20 http://cdn-fastly.deb.debian.org/debian stretch-backports InRelease
Es wurden 999 kB in 0 s geholt (1.641 kB/s).
Paketlisten werden gelesen... Fertig

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Code

apt-cache policy zfsutils-linux


zfsutils-linux:
  Installiert:           0.7.12-1~bpo9+1
  Installationskandidat: 0.7.12-2+deb10u1~bpo9+1
  Versionstabelle:
     0.7.12-2+deb10u1~bpo9+1 500
        100 http://httpredir.debian.org/debian stretch-backports/contrib amd64 Packages
 *** 0.7.12-1~bpo9+1 100
        100 /var/lib/dpkg/status

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thanks for the help
greetings

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