I'm running OMV 7.1.1-1 Armbian 24.5.1 with Linux 6.6.31-current-odroidxu4.
I haven't had any problems applying new updates.
I assume your problem with the package updates is the root of your CPU frequency problems.
I don't have any experience with setting the CPU frequencies.
I just applied the new update - OMV 7.2.1-1 . Everything is still fine.