after Upgrade: 500 - Internal Server Error Failed to execute command 'export PATH=/bin: ...

pcon · 27. April 2022

I have an issue after the upgrade from OMV 5 to OMV 6. After the first login I get the message: "Pending configuration changes. You must apply these changes in order for them to take effect." If I start and confirm the pending configuration changes I get an error messages: 500 - Internal Server Error Failed to execute command 'export PATH=/bin: ... Do you have any idea what to do?

cu pcon

Error Message 500 - Internal Server Error

500 - Internal Server Error

Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; omv-salt deploy run --no-color cronapt 2>&1' with exit code '1': Traceback (most recent call last):

File "/sbin/omv-salt", line 152, in <module>

sys.exit(main())

File "/sbin/omv-salt", line 147, in main

cli()

File "/usr/lib/python3/dist-packages/click/core.py", line 829, in __call__

return self.main(*args, **kwargs)

File "/usr/lib/python3/dist-packages/click/core.py", line 782, in main

rv = self.invoke(ctx)

File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke

return _process_result(sub_ctx.command.invoke(sub_ctx))

File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke

return _process_result(sub_ctx.command.invoke(sub_ctx))

File "/usr/lib/python3/dist-packages/click/core.py", line 1066, in invoke

return ctx.invoke(self.callback, **ctx.params)

File "/usr/lib/python3/dist-packages/click/core.py", line 610, in invoke

return callback(*args, **kwargs)

File "/sbin/omv-salt", line 133, in deploy_run

caller = salt.client.Caller(mopts=mopts)

File "/usr/lib/python3/dist-packages/salt/client/__init__.py", line 2098, in __init__

import salt.minion

File "/usr/lib/python3/dist-packages/salt/minion.py", line 26, in <module>

import salt.crypt

File "/usr/lib/python3/dist-packages/salt/crypt.py", line 53, in <module>

from Cryptodome.Cipher import AES, PKCS1_OAEP, PKCS1_v1_5 as PKCS1_v1_5_CIPHER

File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/__init__.py", line 35, in <module>

from Cryptodome.Cipher._mode_siv import _create_siv_cipher

File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/_mode_siv.py", line 44, in <module>

from Cryptodome.Protocol.KDF import _S2V

File "/usr/lib/python3/dist-packages/Cryptodome/Protocol/KDF.py", line 32, in <module>

from Cryptodome.Hash import SHA1, SHA256, HMAC, CMAC, BLAKE2s

File "/usr/lib/python3/dist-packages/Cryptodome/Hash/HMAC.py", line 38, in <module>

from Cryptodome.Hash import MD5

File "/usr/lib/python3/dist-packages/Cryptodome/Hash/MD5.py", line 29, in <module>

_raw_md5_lib = load_pycryptodome_raw_lib("Cryptodome.Hash._MD5",

File "/usr/lib/python3/dist-packages/Cryptodome/Util/_raw_api.py", line 303, in load_pycryptodome_raw_lib

raise OSError("Cannot load native module '%s': %s" % (name, ", ".join(attempts)))

OSError: Cannot load native module 'Cryptodome.Hash._MD5': Trying '_MD5.cpython-39-x86_64-linux-gnu.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: cannot open shared object file: No such file or directory, Trying '_MD5.abi3.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.abi3.so: cannot open shared object file: No such file or directory, Trying '_MD5.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.so: cannot open shared object file: No such file or directory

OMV\ExecException: Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; omv-salt deploy run --no-color cronapt 2>&1' with exit code '1': Traceback (most recent call last):

File "/sbin/omv-salt", line 152, in <module>

sys.exit(main())

File "/sbin/omv-salt", line 147, in main

cli()

File "/usr/lib/python3/dist-packages/click/core.py", line 829, in __call__

return self.main(*args, **kwargs)

File "/usr/lib/python3/dist-packages/click/core.py", line 782, in main

rv = self.invoke(ctx)

File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke

return _process_result(sub_ctx.command.invoke(sub_ctx))

File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke

return _process_result(sub_ctx.command.invoke(sub_ctx))

File "/usr/lib/python3/dist-packages/click/core.py", line 1066, in invoke

return ctx.invoke(self.callback, **ctx.params)

File "/usr/lib/python3/dist-packages/click/core.py", line 610, in invoke

return callback(*args, **kwargs)

File "/sbin/omv-salt", line 133, in deploy_run

caller = salt.client.Caller(mopts=mopts)

File "/usr/lib/python3/dist-packages/salt/client/__init__.py", line 2098, in __init__

import salt.minion

File "/usr/lib/python3/dist-packages/salt/minion.py", line 26, in <module>

import salt.crypt

File "/usr/lib/python3/dist-packages/salt/crypt.py", line 53, in <module>

from Cryptodome.Cipher import AES, PKCS1_OAEP, PKCS1_v1_5 as PKCS1_v1_5_CIPHER

File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/__init__.py", line 35, in <module>

from Cryptodome.Cipher._mode_siv import _create_siv_cipher

File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/_mode_siv.py", line 44, in <module>

from Cryptodome.Protocol.KDF import _S2V

File "/usr/lib/python3/dist-packages/Cryptodome/Protocol/KDF.py", line 32, in <module>

from Cryptodome.Hash import SHA1, SHA256, HMAC, CMAC, BLAKE2s

File "/usr/lib/python3/dist-packages/Cryptodome/Hash/HMAC.py", line 38, in <module>

from Cryptodome.Hash import MD5

File "/usr/lib/python3/dist-packages/Cryptodome/Hash/MD5.py", line 29, in <module>

_raw_md5_lib = load_pycryptodome_raw_lib("Cryptodome.Hash._MD5",

File "/usr/lib/python3/dist-packages/Cryptodome/Util/_raw_api.py", line 303, in load_pycryptodome_raw_lib

raise OSError("Cannot load native module '%s': %s" % (name, ", ".join(attempts)))

OSError: Cannot load native module 'Cryptodome.Hash._MD5': Trying '_MD5.cpython-39-x86_64-linux-gnu.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: cannot open shared object file: No such file or directory, Trying '_MD5.abi3.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.abi3.so: cannot open shared object file: No such file or directory, Trying '_MD5.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.so: cannot open shared object file: No such file or directory in /usr/share/php/openmediavault/system/process.inc:197

Stack trace:

#0 /usr/share/php/openmediavault/engine/module/serviceabstract.inc(62): OMV\System\Process->execute()

#1 /usr/share/openmediavault/engined/rpc/config.inc(170): OMV\Engine\Module\ServiceAbstract->deploy()

#2 [internal function]: Engined\Rpc\Config->applyChanges(Array, Array)

#3 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)

#4 /usr/share/php/openmediavault/rpc/serviceabstract.inc(149): OMV\Rpc\ServiceAbstract->callMethod('applyChanges', Array, Array)

#5 /usr/share/php/openmediavault/rpc/serviceabstract.inc(588): OMV\Rpc\ServiceAbstract->OMV\Rpc\{closure}('/tmp/bgstatusVA...', '/tmp/bgoutput2B...')

#6 /usr/share/php/openmediavault/rpc/serviceabstract.inc(159): OMV\Rpc\ServiceAbstract->execBgProc(Object(Closure))

#7 /usr/share/openmediavault/engined/rpc/config.inc(192): OMV\Rpc\ServiceAbstract->callMethodBg('applyChanges', Array, Array)

#8 [internal function]: Engined\Rpc\Config->applyChangesBg(Array, Array)

#9 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)

#10 /usr/share/php/openmediavault/rpc/rpc.inc(86): OMV\Rpc\ServiceAbstract->callMethod('applyChangesBg', Array, Array)

#11 /usr/sbin/omv-engined(537): OMV\Rpc\Rpc::call('Config', 'applyChangesBg', Array, Array, 1)

#12 {main}

Zoki · 27. April 2022

can you post the error as text in a Code Box please.

pcon · 27. April 2022

Here the error messaage in a Code Box

Python

500 - Internal Server Error
Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; omv-salt deploy run --no-color cronapt 2>&1' with exit code '1': Traceback (most recent call last):
File "/sbin/omv-salt", line 152, in <module>
sys.exit(main())
File "/sbin/omv-salt", line 147, in main
cli()
File "/usr/lib/python3/dist-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/usr/lib/python3/dist-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/lib/python3/dist-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/lib/python3/dist-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/sbin/omv-salt", line 133, in deploy_run
caller = salt.client.Caller(mopts=mopts)
File "/usr/lib/python3/dist-packages/salt/client/__init__.py", line 2098, in __init__
import salt.minion
File "/usr/lib/python3/dist-packages/salt/minion.py", line 26, in <module>
import salt.crypt
File "/usr/lib/python3/dist-packages/salt/crypt.py", line 53, in <module>
from Cryptodome.Cipher import AES, PKCS1_OAEP, PKCS1_v1_5 as PKCS1_v1_5_CIPHER
File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/__init__.py", line 35, in <module>
from Cryptodome.Cipher._mode_siv import _create_siv_cipher
File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/_mode_siv.py", line 44, in <module>
from Cryptodome.Protocol.KDF import _S2V
File "/usr/lib/python3/dist-packages/Cryptodome/Protocol/KDF.py", line 32, in <module>
from Cryptodome.Hash import SHA1, SHA256, HMAC, CMAC, BLAKE2s
File "/usr/lib/python3/dist-packages/Cryptodome/Hash/HMAC.py", line 38, in <module>
from Cryptodome.Hash import MD5
File "/usr/lib/python3/dist-packages/Cryptodome/Hash/MD5.py", line 29, in <module>
_raw_md5_lib = load_pycryptodome_raw_lib("Cryptodome.Hash._MD5",
File "/usr/lib/python3/dist-packages/Cryptodome/Util/_raw_api.py", line 303, in load_pycryptodome_raw_lib
raise OSError("Cannot load native module '%s': %s" % (name, ", ".join(attempts)))
OSError: Cannot load native module 'Cryptodome.Hash._MD5': Trying '_MD5.cpython-39-x86_64-linux-gnu.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: cannot open shared object file: No such file or directory, Trying '_MD5.abi3.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.abi3.so: cannot open shared object file: No such file or directory, Trying '_MD5.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.so: cannot open shared object file: No such file or directory

OMV\ExecException: Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; omv-salt deploy run --no-color cronapt 2>&1' with exit code '1': Traceback (most recent call last):
File "/sbin/omv-salt", line 152, in <module>
sys.exit(main())
File "/sbin/omv-salt", line 147, in main
cli()
File "/usr/lib/python3/dist-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/usr/lib/python3/dist-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/lib/python3/dist-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/lib/python3/dist-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/lib/python3/dist-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/sbin/omv-salt", line 133, in deploy_run
caller = salt.client.Caller(mopts=mopts)
File "/usr/lib/python3/dist-packages/salt/client/__init__.py", line 2098, in __init__
import salt.minion
File "/usr/lib/python3/dist-packages/salt/minion.py", line 26, in <module>
import salt.crypt
File "/usr/lib/python3/dist-packages/salt/crypt.py", line 53, in <module>
from Cryptodome.Cipher import AES, PKCS1_OAEP, PKCS1_v1_5 as PKCS1_v1_5_CIPHER
File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/__init__.py", line 35, in <module>
from Cryptodome.Cipher._mode_siv import _create_siv_cipher
File "/usr/lib/python3/dist-packages/Cryptodome/Cipher/_mode_siv.py", line 44, in <module>
from Cryptodome.Protocol.KDF import _S2V
File "/usr/lib/python3/dist-packages/Cryptodome/Protocol/KDF.py", line 32, in <module>
from Cryptodome.Hash import SHA1, SHA256, HMAC, CMAC, BLAKE2s
File "/usr/lib/python3/dist-packages/Cryptodome/Hash/HMAC.py", line 38, in <module>
from Cryptodome.Hash import MD5
File "/usr/lib/python3/dist-packages/Cryptodome/Hash/MD5.py", line 29, in <module>
_raw_md5_lib = load_pycryptodome_raw_lib("Cryptodome.Hash._MD5",
File "/usr/lib/python3/dist-packages/Cryptodome/Util/_raw_api.py", line 303, in load_pycryptodome_raw_lib
raise OSError("Cannot load native module '%s': %s" % (name, ", ".join(attempts)))
OSError: Cannot load native module 'Cryptodome.Hash._MD5': Trying '_MD5.cpython-39-x86_64-linux-gnu.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: cannot open shared object file: No such file or directory, Trying '_MD5.abi3.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.abi3.so: cannot open shared object file: No such file or directory, Trying '_MD5.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.so: cannot open shared object file: No such file or directory in /usr/share/php/openmediavault/system/process.inc:197
Stack trace:
#0 /usr/share/php/openmediavault/engine/module/serviceabstract.inc(62): OMV\System\Process->execute()
#1 /usr/share/openmediavault/engined/rpc/config.inc(170): OMV\Engine\Module\ServiceAbstract->deploy()
#2 [internal function]: Engined\Rpc\Config->applyChanges(Array, Array)
#3 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)
#4 /usr/share/php/openmediavault/rpc/serviceabstract.inc(149): OMV\Rpc\ServiceAbstract->callMethod('applyChanges', Array, Array)
#5 /usr/share/php/openmediavault/rpc/serviceabstract.inc(588): OMV\Rpc\ServiceAbstract->OMV\Rpc\{closure}('/tmp/bgstatusVA...', '/tmp/bgoutput2B...')
#6 /usr/share/php/openmediavault/rpc/serviceabstract.inc(159): OMV\Rpc\ServiceAbstract->execBgProc(Object(Closure))
#7 /usr/share/openmediavault/engined/rpc/config.inc(192): OMV\Rpc\ServiceAbstract->callMethodBg('applyChanges', Array, Array)
#8 [internal function]: Engined\Rpc\Config->applyChangesBg(Array, Array)
#9 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)
#10 /usr/share/php/openmediavault/rpc/rpc.inc(86): OMV\Rpc\ServiceAbstract->callMethod('applyChangesBg', Array, Array)
#11 /usr/sbin/omv-engined(537): OMV\Rpc\Rpc::call('Config', 'applyChangesBg', Array, Array, 1)
#12 {main}

Alles anzeigen

Zoki · 27. April 2022

How did you install / update python ?

There is a library missing:

Code

OSError: Cannot load native module 'Cryptodome.Hash._MD5': Trying '_MD5.cpython-39-x86_64-linux-gnu.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: cannot open shared object file: No such file or directory, Trying '_MD5.abi3.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.abi3.so: cannot open shared object file: No such file or directory, Trying '_MD5.so': /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.so: cannot open shared object file: No such file or directory

Here is one of my systems.

Code

root@omv:~# ls -l /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so
-rw-r--r-- 1 root root 14336  8. Dez 2020  /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so
root@omv:~#

you could try to install the package with pip install pycryptodome

ryecoaaron · 27. April 2022

I bet it needs usrmerge installed. apt-get install usrmerge then run the fix script - https://github.com/OpenMediaVa…lob/master/fix5to6upgrade

pcon · 28. April 2022

Zoki pycryptodome is installed see the code box.

Code

root@OMV:~# ls -l /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so
lrwxrwxrwx 1 root root 15 10. Jul 2021  /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so -> GTS_Root_R3.pem
root@OMV:~# apt install python3-pycryptodome
Paketlisten werden gelesen… Fertig
Abhängigkeitsbaum wird aufgebaut… Fertig
Statusinformationen werden eingelesen… Fertig
python3-pycryptodome ist schon die neueste Version (3.9.7+dfsg1-1+b2).
0 aktualisiert, 0 neu installiert, 0 zu entfernen und 0 nicht aktualisiert.

Zoki · 28. April 2022

I do not think, that linking a shared library (.so) to a cryptographic certificate (.pem) is correct.

try this:

file /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so and

file /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/GTS_Root_R3.pem

it should report something like this:

Code

root@omv:~# file /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, BuildID[sha1]=52c7272c581844d8c494d2cb4af753cfaf9f1512, stripped

In your case, this would report al link and the second ???

pcon · 28. April 2022

Zitat von ryecoaaron

I bet it needs usrmerge installed. apt-get install usrmerge then run the fix script - https://github.com/OpenMediaVa…lob/master/fix5to6upgrade

run apt install usrmerge message: usrmerge is already the latest version.

Code

apt install usrmerge
Package lists are read... Done
Dependency tree is built... Done
Status information is read... Done
usrmerge is already the latest version (25).
0 updated, 0 reinstalled, 0 to remove and 0 not updated.

executing the script I get the same and other error messages. See the attached file. Code box not possible:

ryecoaaron · 28. April 2022

Zitat von pcon

executing the script I get the same and other error messages

I think you have altered too much of your python environment.

pcon · 28. April 2022

Zitat von Zoki

try this:

file /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so and
file /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/GTS_Root_R3.pem

In your case, this would report al link and the second ???

Alles anzeigen

executed the file command, one broken link and a non existing file.

Code

root@OMV:~# file /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/_MD5.cpython-39-x86_64-linux-gnu.so: broken symbolic link to GTS_Root_R3.pem
root@OMV:~# file  /usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/GTS_Root_R3.pem
/usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/GTS_Root_R3.pem: cannot open `/usr/lib/python3/dist-packages/Cryptodome/Util/../Hash/GTS_Root_R3.pem' (No such file or directory)
root@TerraOMV:~#

pcon · 28. April 2022

Zitat von ryecoaaron

I think you have altered too much of your python environment.

I don't have change nothing in Python. Only upgrade from OMV 5 to OMV 6 not more and not less.

ryecoaaron · 28. April 2022

Huh. Then maybe: apt-get install --reinstall python3-pycryptodome

pcon · 28. April 2022

apt-get install --reinstall python3-pycryptodome That is the solution.

Thanks to all supporter.

after Upgrade: 500 - Internal Server Error Failed to execute command 'export PATH=/bin: ...

pcon 28. April 2022

Jetzt mitmachen!

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