Errors when Upgrading from OMV 3.0.99 to OMV 4

David B · Apr 2nd 2018

After going back and forth for a while on whether I should take the OMV 4 upgrade, I decided to finally do it. For the most part, it seems that everything went fine, and all of my plugins appear to be working even after the upgrade. I noticed this a the end of my output though, and it's making me nervous. I am not sure what to do about it. Any advice would be much appreciated. (Going to tag @ryecoaaron and @votdev on this.)

Code

Created symlink /etc/systemd/system/sysinit.target.wants/lvm2-lvmpolld.socket ->                                                                                                                                                              /lib/systemd/system/lvm2-lvmpolld.socket.
Processing triggers for libc-bin (2.24-11+deb9u3) ...
Processing triggers for systemd (232-25+deb9u3) ...
Processing triggers for php7.0-fpm (7.0.27-0+deb9u1) ...
Processing triggers for resolvconf (1.79) ...
Processing triggers for ca-certificates (20161130+nmu1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for initramfs-tools (0.130) ...
update-initramfs: Generating /boot/initrd.img-4.9.0-0.bpo.5-amd64
W: mdadm: /etc/mdadm/mdadm.conf defines no arrays.
Errors were encountered while processing:
 collectd-core
 collectd
 openmediavault
 openmediavault-omvextrasorg
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at                                                                                                                                                              0x7fa0bcca1730>
Traceback (most recent call last):
  File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at                                                                                                                                                              0x7fa0bcca1730>
Traceback (most recent call last):
  File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable
E: Sub-process /usr/bin/dpkg returned an error code (1)

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ryecoaaron · Apr 2nd 2018

try apt-get -f install

David B · Apr 2nd 2018

Quote from ryecoaaron

try apt-get -f install

I am getting the same thing unfortunately, but I have a little more detailed output this time.

Code

Reading package lists... Done
Building dependency tree
Reading state information... Done
The following package was automatically installed and is no longer required:
  python-ndg-httpsclient
Use 'apt autoremove' to remove it.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
4 not fully installed or removed.
After this operation, 0 B of additional disk space will be used.
Setting up collectd-core (5.7.1-1.1) ...
Job for collectd.service failed because the control process exited with error co                                                                                                                                                             de.
See "systemctl status collectd.service" and "journalctl -xe" for details.
invoke-rc.d: initscript collectd, action "start" failed.
● collectd.service - Statistics collection and monitoring daemon
   Loaded: loaded (/lib/systemd/system/collectd.service; enabled; vendor preset:                                                                                                                                                              enabled)
   Active: activating (auto-restart) (Result: exit-code) since Mon 2018-04-02 14                                                                                                                                                             :08:28 EDT; 8ms ago
     Docs: man:collectd(1)
           man:collectd.conf(5)
           https://collectd.org
  Process: 12632 ExecStartPre=/usr/sbin/collectd -t (code=exited, status=1/FAILU                                                                                                                                                             RE)


Apr 02 14:08:28 openmediavault systemd[1]: Failed to start Statistics collec…on.
Apr 02 14:08:28 openmediavault systemd[1]: collectd.service: Unit entered fa…te.
Apr 02 14:08:28 openmediavault systemd[1]: collectd.service: Failed with res…e'.
Hint: Some lines were ellipsized, use -l to show in full.
dpkg: error processing package collectd-core (--configure):
 subprocess installed post-installation script returned error exit status 1
dpkg: dependency problems prevent configuration of collectd:
 collectd depends on collectd-core (>= 5.7.1-1.1); however:
  Package collectd-core is not configured yet.
 collectd depends on collectd-core (<< 6~); however:
  Package collectd-core is not configured yet.


dpkg: error processing package collectd (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of openmediavault:
 openmediavault depends on collectd; however:
  Package collectd is not configured yet.


dpkg: error processing package openmediavault (--configure):
 dependency problems - leaving unconfigured
dpkg: dependency problems prevent configuration of openmediavault-omvextrasorg:
 openmediavault-omvextrasorg depends on openmediavault (>= 3.0.67); however:
  Package openmediavault is not configured yet.


dpkg: error processing package openmediavault-omvextrasorg (--configure):
 dependency problems - leaving unconfigured
Errors were encountered while processing:
 collectd-core
 collectd
 openmediavault
 openmediavault-omvextrasorg
E: Sub-process /usr/bin/dpkg returned an error code (1)

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David B · Apr 3rd 2018

I also keep getting these e-mails every half-hour @ryecoaaron.

Code

PHP Warning:  PHP Startup: Unable to load dynamic library '/usr/lib/php5/20131226/pam.so' - /usr/lib/php5/20131226/pam.so: cannot open shared object file: No such file or directory in Unknown on line 0
PHP Warning:  PHP Startup: Unable to load dynamic library '/usr/lib/php5/20131226/pam.so' - /usr/lib/php5/20131226/pam.so: cannot open shared object file: No such file or directory in Unknown on line 0
PHP Warning:  PHP Startup: Unable to load dynamic library '/usr/lib/php5/20131226/pam.so' - /usr/lib/php5/20131226/pam.so: cannot open shared object file: No such file or directory in Unknown on line 0

ryecoaaron · Apr 3rd 2018

Looks like php didn't upgrade. What is the output of: dpkg -l | grep -E "php|openm"

Did you reboot by any chance?

David B · Apr 3rd 2018

Quote from ryecoaaron

Looks like php didn't upgrade. What is the output of: dpkg -l | grep -E "php|openm"

Did you reboot by any chance?

Here it is! It might be worth noting that after this happened the first time around, I restored a CloneZilla image that I took before the upgrade, tried the upgrade again, and it happened again.

Code

iU  openmediavault                  4.1.4-1                        all          openmediavault - The open network attached storage solution
ii  openmediavault-goodsync         1.0.1                          all          This plugin simplifies the use of GoodSync on OpenMediaVault 3.
ii  openmediavault-keyring          1.0                            all          GnuPG archive keys of the OpenMediaVault archive
ii  openmediavault-letsencrypt      3.4.5                          all          Generate free and valid SSL certificates for OMV
ii  openmediavault-mysql            3.0.4                          all          MySQL plugin for OpenMediaVault.
ii  openmediavault-nginx            3.0.11                         all          Nginx plugin for OpenMediaVault.
iU  openmediavault-omvextrasorg     3.4.29                         all          OMV-Extras.org Package Repositories for OpenMediaVault
ii  openmediavault-openvpn          3.0.6                          all          OpenVPN plugin for OpenMediaVault.
ii  openmediavault-resetperms       3.3                            all          Reset Permissions
ii  openmediavault-sensors          3.0                            all          Provides a cpu temperature monitor
ii  openmediavault-wol              3.3                            all          OpenMediaVault WOL plugin
ii  php-bcmath                      1:7.0+49                       all          Bcmath module for PHP [default]
ii  php-cgi                         1:7.0+49                       all          server-side, HTML-embedded scripting language (CGI binary) (default)
ii  php-common                      1:49                           all          Common files for PHP packages
ii  php-fpm                         1:7.0+49                       all          server-side, HTML-embedded scripting language (FPM-CGI binary) (default)
ii  php-mbstring                    1:7.0+49                       all          MBSTRING module for PHP [default]
ii  php-pam                         1.0.3-1                        amd64        pam module for PHP 7
ii  php-xml                         1:7.0+49                       all          DOM, SimpleXML, WDDX, XML, and XSL module for PHP [default]
ii  php5                            5.6.33+dfsg-0+deb8u1           all          server-side, HTML-embedded scripting language (metapackage)
ii  php5-cgi                        5.6.33+dfsg-0+deb8u1           amd64        server-side, HTML-embedded scripting language (CGI binary)
ii  php5-cli                        5.6.33+dfsg-0+deb8u1           amd64        command-line interpreter for the php5 scripting language
ii  php5-common                     5.6.33+dfsg-0+deb8u1           amd64        Common files for packages built from the php5 source
ii  php5-curl                       5.6.33+dfsg-0+deb8u1           amd64        CURL module for php5
ii  php5-fpm                        5.6.33+dfsg-0+deb8u1           amd64        server-side, HTML-embedded scripting language (FPM-CGI binary)
ii  php5-gd                         5.6.33+dfsg-0+deb8u1           amd64        GD module for php5
ii  php5-json                       1.3.6-1                        amd64        JSON module for php5
ii  php5-mysqlnd                    5.6.33+dfsg-0+deb8u1           amd64        MySQL module for php5 (Native Driver)
rc  php5-pam                        1.0.3-4                        amd64        pam module for PHP 5
ii  php5-pgsql                      5.6.33+dfsg-0+deb8u1           amd64        PostgreSQL module for php5
ii  php5-sqlite                     5.6.33+dfsg-0+deb8u1           amd64        SQLite module for php5
ii  php7.0-bcmath                   7.0.27-0+deb9u1                amd64        Bcmath module for PHP
ii  php7.0-cgi                      7.0.27-0+deb9u1                amd64        server-side, HTML-embedded scripting language (CGI binary)
ii  php7.0-cli                      7.0.27-0+deb9u1                amd64        command-line interpreter for the PHP scripting language
ii  php7.0-common                   7.0.27-0+deb9u1                amd64        documentation, examples and common module for PHP
ii  php7.0-fpm                      7.0.27-0+deb9u1                amd64        server-side, HTML-embedded scripting language (FPM-CGI binary)
ii  php7.0-json                     7.0.27-0+deb9u1                amd64        JSON module for PHP
ii  php7.0-mbstring                 7.0.27-0+deb9u1                amd64        MBSTRING module for PHP
ii  php7.0-opcache                  7.0.27-0+deb9u1                amd64        Zend OpCache module for PHP
ii  php7.0-readline                 7.0.27-0+deb9u1                amd64        readline module for PHP
ii  php7.0-xml                      7.0.27-0+deb9u1                amd64        DOM, SimpleXML, WDDX, XML, and XSL module for PHP

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And I did try rebooting. After doing so, I am now greeted with this error message when I log in.

The property 'nullpasswords' does not exist in the model 'conf.service.smb'.

Code

Error #0:
OMV\AssertException: The property 'nullpasswords' does not exist in the model 'conf.service.smb'. in /usr/share/php/openmediavault/config/configobject.inc:71
Stack trace:
#0 /usr/share/php/openmediavault/config/configobject.inc(186): OMV\Config\ConfigObject->assertExists('nullpasswords')
#1 /usr/share/php/openmediavault/config/configobject.inc(271): OMV\Config\ConfigObject->set('nullpasswords', '0', false)
#2 /usr/share/php/openmediavault/config/configobject.inc(233): OMV\Config\ConfigObject->setFlatAssoc(Array, false, false)
#3 /usr/share/php/openmediavault/config/database.inc(90): OMV\Config\ConfigObject->setAssoc(Array, false)
#4 /usr/share/openmediavault/engined/module/samba.inc(72): OMV\Config\Database->get('conf.service.sm...')
#5 /usr/share/openmediavault/engined/rpc/services.inc(56): OMVModuleSamba->getStatus()
#6 [internal function]: OMVRpcServiceServices->getStatus(Array, Array)
#7 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)
#8 /usr/share/php/openmediavault/rpc/rpc.inc(86): OMV\Rpc\ServiceAbstract->callMethod('getStatus', Array, Array)
#9 /usr/sbin/omv-engined(536): OMV\Rpc\Rpc::call('Services', 'getStatus', Array, Array, 1)
#10 {main}

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David B · Apr 3rd 2018

Yet another update to the WebUI problem. After clearing my web browser's cache, it's even more screwed up now. All that's displaying is the OMV logo.

Here's what I'm seeing in my web browser.

ryecoaaron · Apr 3rd 2018

Quote from David B

After clearing my web browser's cache, it's even more screwed up now. All that's displaying is the OMV logo.

That is because your previous post shows that the openmediavault package is at iU (not fully installed). Try apt-get -f install. I have had no problem with upgrades from 3.x to 4.x but I haven't tried lately. Seems like you have something installed that still wants php5.

David B · Apr 3rd 2018

Quote from ryecoaaron

That is because your previous post shows that the openmediavault package is at iU (not fully installed). Try apt-get -f install. I have had no problem with upgrades from 3.x to 4.x but I haven't tried lately. Seems like you have something installed that still wants php5.

I tried apt-get -f install but unfortunately it still did not resolve the problem. Concerning something still wanting php5, could that be the fault of the openmediavault-nginx plugin? I use it for my NextCloud installation.

ryecoaaron · Apr 3rd 2018

Quote from David B

could that be the fault of the openmediavault-nginx plugin?

It should get upgraded to the OMV 4.x version that uses php7 although in your output, the omv-extras plugins are still at 3.x version (probably because they depend on OMV 4.x which hasn't finished installing yet).

David B · Apr 3rd 2018

Hmm, that's odd. What about collectd? Is that failing because of OMV or is OMV failing because of it?

ryecoaaron · Apr 3rd 2018

Quote from David B

What about collectd? Is that failing because of OMV or is OMV failing because of it?

Hard to say. Better question for Volker.

David B · Apr 3rd 2018

Quote from ryecoaaron

Hard to say. Better question for Volker.

Alright. I've already tagged him here so I'll just wait it out. Yesterday was the last free time that I'll have in a while and I need my OMV server to work perfectly, so I restored my OMV 3 CloneZilla image for now. When I play with the upgrade again, I will be doing so in a VM of the CloneZilla image. Hopefully I will be able to sort out issues in the VM before doing the upgrade to my actual OMV server.

David B · Apr 5th 2018

Any advice @votdev?

votdev · Apr 5th 2018

I think the problem is that collected was not configured correctly because of a malformed config file:

Quote

Process: 12632 ExecStartPre=/usr/sbin/collectd -t

But i don't have any idea why this happens. I migrated many test systems from 3.x to 4.x without such issues.

David B · Apr 5th 2018

Quote from votdev

I think the problem is that collected was not configured correctly because of a malformed config file:

But i don't have any idea why this happens. I migrated many test systems from 3.x to 4.x without such issues.

Well that sucks. Is there anything I can do to fix the possibly-malformed config file before trying to take the upgrade again? I restored a CloneZilla image I had of OMV 3 as a way to undo the damage that the upgrade caused.

votdev · Apr 5th 2018

Try

# omv-mkconf collectd

David B · Apr 5th 2018

Quote from votdev

Try

# omv-mkconf collectd

Okay. Should I do this before I attempt the upgrade or after the upgrade fails?

David B · May 10th 2018

@votdev I finally had time to the OMV upgrade again after running this, and it still did not work. Any other suggestions?

Here are some of the errors that I've seen when I try to run apt upgrade. I am not sure if any of them will be helpful. Because I do not want to screw up my live OMV server, I'm playing around with the upgrade in a VM clone before I try to do it for real.

David B · May 11th 2018

Sorry to annoy you yet again @votdev, but I am really stuck right now. Do you have any additional suggestions?

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