OMV update giving errors.

rtibby · Mar 2nd 2024

I am not able to update my OMV6 for a while. This is the error :

Upgrade system

Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be REMOVED: linux-image-6.1.0-0.deb11.6-amd64
The following NEW packages will be installed: linux-headers-6.1.0-0.deb11.13-amd64 linux-headers-6.1.0-0.deb11.13-common linux-image-6.1.0-0.deb11.13-amd64
The following packages will be upgraded: adduser amd64-microcode base-files bind9-host bind9-libs conmon containerd.io cpio crun curl dbus distro-info-data docker-buildx-plugin docker-ce docker-ce-cli docker-compose-plugin dpkg dpkg-dev grub-common grub-pc grub-pc-bin grub2-common intel-microcode libbsd0 libc-bin libc-dev-bin libc-l10n libc6 libc6-dev libcuda1 libcups2 libcurl4 libdbus-1-3 libdpkg-perl libglib2.0-0 libgnutls30 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libncurses6 libncursesw6 libnftables1 libnghttp2-14 libnvcuvid1 libnvidia-encode1 libnvidia-ml1 libnvidia-ptxjitcompiler1 libperl5.32 libssl1.1 libtiff5 libtinfo6 libx11-6 libx11-data libxpm4 libyajl2 libzmq5 linux-compiler-gcc-10-x86 linux-headers-amd64 linux-image-amd64 linux-kbuild-6.1 linux-libc-dev locales logrotate ncurses-base ncurses-bin nftables nvidia-alternative nvidia-kernel-dkms nvidia-kernel-support nvidia-legacy-check nvidia-smi openmediavault openmediavault-compose openmediavault-ftp openmediavault-omvextrasorg openssh-client openssh-server openssh-sftp-server openssl perl perl-base perl-modules-5.32 podman postfix salt-common salt-minion tar tzdata
Preconfiguring packages ...
/tmp/grub-pc.config.H9s3R7: 39: /etc/default/grub: iommu.passthrough=1: not found
grub-pc failed to preconfigure, with exit status 127
89 upgraded, 3 newly installed, 1 to remove and 0 not upgraded.
3 not fully installed or removed.
Need to get 0 B/324 MB of archives.
After this operation, 74.9 MB of additional disk space will be used.
(Reading database ... (Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 112813 files and directories currently installed.)
Removing linux-image-6.1.0-0.deb11.6-amd64 (6.1.15-1~bpo11+1) ...
/etc/kernel/postrm.d/initramfs-tools:
update-initramfs: Deleting /boot/initrd.img-6.1.0-0.deb11.6-amd64
/etc/kernel/postrm.d/zz-update-grub:
/usr/sbin/grub-mkconfig: 39: /etc/default/grub: iommu.passthrough=1: not found
run-parts: /etc/kernel/postrm.d/zz-update-grub exited with return code 127
dpkg: error processing package linux-image-6.1.0-0.deb11.6-amd64 (--remove): installed linux-image-6.1.0-0.deb11.6-amd64 package post-removal script subprocess returned error exit status 1
dpkg: too many errors, stopping
Errors were encountered while processing: linux-image-6.1.0-0.deb11.6-amd64
Processing was halted because there were too many errors.

** CONNECTION LOST **

ANY Ideas what is happening?

ryecoaaron · Mar 2nd 2024

Quote from rtibby

ANY Ideas what is happening?

Nothing to worry about. Since your system was installing updates to omv itself and plugins, OMV's engined is being restarted which can sometimes cause the connection loss. The upgrade will still complete normally. Just wait a couple of minutes and hit ctrl-shift-R.

rtibby · Mar 7th 2024

I appreciate your effort and time to reply and help.

However, your solution ("Problem #12: Connection lost error message when installing a plugin") - is far from working.

If I do what is suggested - nothing is installed, even if I leave it 30 min .... before Ctrl+Shift+R

I have 93 updates showing as available - still 93 after try solution you mentioned - nothing installed

I am far from an OMV expert - but if you take a look on my error message post 1 , Before "CONNECTION LOST" there are some mentions of errors , and concluding "Processing was halted because there were too many errors." .

In addition to the message in the Update textbox which I copy/pasted Post #1 , there is a big, ugly red error window: "500 internal server error" :

"Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; export DEBIAN_FRONTEND=noninteractive; apt-get --yes --allow-downgrades --allow-change-held-packages --fix-broken --fix-missing --auto-remove --allow-unauthenticated --show-upgraded --option DPkg::Options::="--force-confold" dist-upgrade 2>&1' with exit code '100': Reading package lists... "

So I am strongly doubt that "The upgrade will still complete normally" as you stated....

Also , you should remove the "resolved" tag .....

Soma · Mar 7th 2024

What is the output (and post it inside a CODE box, please. It's the </> symbol of the BLUE banner of the posting box)

sudo cat /etc/default/grub

Quote from rtibby

/usr/sbin/grub-mkconfig: 39: /etc/default/grub: iommu.passthrough=1: not found
run-parts: /etc/kernel/postrm.d/zz-update-grub exited with return code 127

It is complaining about a argument there: iommu.passthrough=1

update-grub exited with return code 127 at DuckDuckGo

rtibby · Mar 7th 2024

Ok , This is the output of "sudo cat /etc/default/grub" :

Code

# If you change this file, run 'update-grub' afterwards to update
# /boot/grub/grub.cfg.
# For full documentation of the options in this file, see:
#   info -f grub -n 'Simple configuration'

GRUB_DEFAULT=0
GRUB_TIMEOUT=5
GRUB_DISTRIBUTOR=`lsb_release -i -s 2> /dev/null || echo Debian`
GRUB_CMDLINE_LINUX_DEFAULT="quiet"
GRUB_CMDLINE_LINUX=""

# Uncomment to enable BadRAM filtering, modify to suit your needs
# This works with Linux (no patch required) and with any kernel that obtains
# the memory map information from GRUB (GNU Mach, kernel of FreeBSD ...)
#GRUB_BADRAM="0x01234567,0xfefefefe,0x89abcdef,0xefefefef"

# Uncomment to disable graphical terminal (grub-pc only)
#GRUB_TERMINAL=console

# The resolution used on graphical terminal
# note that you can use only modes which your graphic card supports via VBE
# you can see them in real GRUB with the command `vbeinfo'
#GRUB_GFXMODE=640x480

# Uncomment if you don't want GRUB to pass "root=UUID=xxx" parameter to Linux
#GRUB_DISABLE_LINUX_UUID=true

# Uncomment to disable generation of recovery mode menu entries
#GRUB_DISABLE_RECOVERY="true"

# Uncomment to get a beep at grub start
#GRUB_INIT_TUNE="480 440 1"


# These were suggested to make NNMe disk to work
# https://forum.openmediavault.org/index.php?thread/42005-omv6-can-t-detect-all-                                                                                                                                   hdd-s/
iommu=off
intel_iommu=off
iommu.passthrough=1

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Soma · Mar 7th 2024

[EDIT] Some references:
The kernel's command-line parameters — The Linux Kernel documentation

[/EDIT]

Quote from rtibby

Ok , This is the output of "sudo cat /etc/default/grub" :

I don't use GRUB, have no idea why that line is there or what it's for and it's way out of my league.

There's a reference to a post that is this:

OMV6 Can't detect all HDD's - General - openmediavault

That suggests that it was added by OMV or by USER input in any given time/update.

So, you better wait for ryecoaaron or votdev to give a better answer than mine.

If you want to risk it and you have a working backup of the OS drive you could comment that line, run update-grub and try again to run omv-upgrade

Just accept that it might OR might not work and can do more damage than good.

rtibby · Mar 7th 2024

Quote from Soma

There's a reference to a post that is this:
OMV6 Can't detect all HDD's - General - openmediavault

i did read that.
Indeed , I have an PCIe card with a M.2 NVMe which happens to stop working after a while, showing "missing file system", and it shows again if I reboot the server.

rtibby · Mar 7th 2024

This is the error message after update stops due to errors

Soma · Mar 7th 2024

Quote from rtibby

This is the error message after update stops due to errors

Click on the bell on the top right corner and copy/paste the complete error inside a code box.

The screenshot doesn't show all of it and it's a mess to read.

rtibby · Mar 7th 2024

ok , this is the error:

Code

Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; export DEBIAN_FRONTEND=noninteractive; apt-get --yes --allow-downgrades --allow-change-held-packages --fix-broken --fix-missing --auto-remove --allow-unauthenticated --show-upgraded --option DPkg::Options::="--force-confold" dist-upgrade 2>&1' with exit code '100': Reading package lists...

Building dependency tree...

Reading state information...

Calculating upgrade...

The following packages will be REMOVED:
  linux-image-6.1.0-0.deb11.6-amd64
The following NEW packages will be installed:
  linux-headers-6.1.0-0.deb11.13-amd64 linux-headers-6.1.0-0.deb11.13-common
  linux-image-6.1.0-0.deb11.13-amd64
The following packages will be upgraded:
  adduser amd64-microcode base-files bind9-host bind9-libs conmon
  containerd.io cpio crun curl dbus distro-info-data docker-buildx-plugin
  docker-ce docker-ce-cli docker-compose-plugin dpkg dpkg-dev grub-common
  grub-pc grub-pc-bin grub2-common intel-microcode libbsd0 libc-bin
  libc-dev-bin libc-l10n libc6 libc6-dev libcuda1 libcups2 libcurl4
  libdbus-1-3 libdpkg-perl libglib2.0-0 libgnutls30 libgssapi-krb5-2
  libk5crypto3 libkrb5-3 libkrb5support0 libncurses6 libncursesw6 libnftables1
  libnghttp2-14 libnvcuvid1 libnvidia-encode1 libnvidia-ml1
  libnvidia-ptxjitcompiler1 libperl5.32 libssl1.1 libtiff5 libtinfo6 libx11-6
  libx11-data libxpm4 libyajl2 libzmq5 linux-compiler-gcc-10-x86
  linux-headers-amd64 linux-image-amd64 linux-kbuild-6.1 linux-libc-dev
  locales logrotate ncurses-base ncurses-bin nftables nvidia-alternative
  nvidia-kernel-dkms nvidia-kernel-support nvidia-legacy-check nvidia-smi
  openmediavault openmediavault-compose openmediavault-ftp
  openmediavault-omvextrasorg openssh-client openssh-server
  openssh-sftp-server openssl perl perl-base perl-modules-5.32 podman postfix
  salt-common salt-minion tar tzdata
Preconfiguring packages ...
/tmp/grub-pc.config.7wckpd: 39: /etc/default/grub: iommu.passthrough=1: not found
grub-pc failed to preconfigure, with exit status 127
89 upgraded, 3 newly installed, 1 to remove and 0 not upgraded.
3 not fully installed or removed.
Need to get 0 B/324 MB of archives.
After this operation, 74.9 MB of additional disk space will be used.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 112813 files and directories currently installed.)
Removing linux-image-6.1.0-0.deb11.6-amd64 (6.1.15-1~bpo11+1) ...
/etc/kernel/postrm.d/initramfs-tools:
update-initramfs: Deleting /boot/initrd.img-6.1.0-0.deb11.6-amd64
/etc/kernel/postrm.d/zz-update-grub:
/usr/sbin/grub-mkconfig: 39: /etc/default/grub: iommu.passthrough=1: not found
run-parts: /etc/kernel/postrm.d/zz-update-grub exited with return code 127
dpkg: error processing package linux-image-6.1.0-0.deb11.6-amd64 (--remove):
 installed linux-image-6.1.0-0.deb11.6-amd64 package post-removal script subprocess returned error exit status 1
dpkg: too many errors, stopping
Errors were encountered while processing:
 linux-image-6.1.0-0.deb11.6-amd64
Processing was halted because there were too many errors.
E: Sub-process /usr/bin/dpkg returned an error code (1)

OMV\ExecException: Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C.UTF-8; export LANGUAGE=; export DEBIAN_FRONTEND=noninteractive; apt-get --yes --allow-downgrades --allow-change-held-packages --fix-broken --fix-missing --auto-remove --allow-unauthenticated --show-upgraded --option DPkg::Options::="--force-confold" dist-upgrade 2>&1' with exit code '100': Reading package lists...

Building dependency tree...

Reading state information...

Calculating upgrade...

The following packages will be REMOVED:
  linux-image-6.1.0-0.deb11.6-amd64
The following NEW packages will be installed:
  linux-headers-6.1.0-0.deb11.13-amd64 linux-headers-6.1.0-0.deb11.13-common
  linux-image-6.1.0-0.deb11.13-amd64
The following packages will be upgraded:
  adduser amd64-microcode base-files bind9-host bind9-libs conmon
  containerd.io cpio crun curl dbus distro-info-data docker-buildx-plugin
  docker-ce docker-ce-cli docker-compose-plugin dpkg dpkg-dev grub-common
  grub-pc grub-pc-bin grub2-common intel-microcode libbsd0 libc-bin
  libc-dev-bin libc-l10n libc6 libc6-dev libcuda1 libcups2 libcurl4
  libdbus-1-3 libdpkg-perl libglib2.0-0 libgnutls30 libgssapi-krb5-2
  libk5crypto3 libkrb5-3 libkrb5support0 libncurses6 libncursesw6 libnftables1
  libnghttp2-14 libnvcuvid1 libnvidia-encode1 libnvidia-ml1
  libnvidia-ptxjitcompiler1 libperl5.32 libssl1.1 libtiff5 libtinfo6 libx11-6
  libx11-data libxpm4 libyajl2 libzmq5 linux-compiler-gcc-10-x86
  linux-headers-amd64 linux-image-amd64 linux-kbuild-6.1 linux-libc-dev
  locales logrotate ncurses-base ncurses-bin nftables nvidia-alternative
  nvidia-kernel-dkms nvidia-kernel-support nvidia-legacy-check nvidia-smi
  openmediavault openmediavault-compose openmediavault-ftp
  openmediavault-omvextrasorg openssh-client openssh-server
  openssh-sftp-server openssl perl perl-base perl-modules-5.32 podman postfix
  salt-common salt-minion tar tzdata
Preconfiguring packages ...
/tmp/grub-pc.config.7wckpd: 39: /etc/default/grub: iommu.passthrough=1: not found
grub-pc failed to preconfigure, with exit status 127
89 upgraded, 3 newly installed, 1 to remove and 0 not upgraded.
3 not fully installed or removed.
Need to get 0 B/324 MB of archives.
After this operation, 74.9 MB of additional disk space will be used.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 112813 files and directories currently installed.)
Removing linux-image-6.1.0-0.deb11.6-amd64 (6.1.15-1~bpo11+1) ...
/etc/kernel/postrm.d/initramfs-tools:
update-initramfs: Deleting /boot/initrd.img-6.1.0-0.deb11.6-amd64
/etc/kernel/postrm.d/zz-update-grub:
/usr/sbin/grub-mkconfig: 39: /etc/default/grub: iommu.passthrough=1: not found
run-parts: /etc/kernel/postrm.d/zz-update-grub exited with return code 127
dpkg: error processing package linux-image-6.1.0-0.deb11.6-amd64 (--remove):
 installed linux-image-6.1.0-0.deb11.6-amd64 package post-removal script subprocess returned error exit status 1
dpkg: too many errors, stopping
Errors were encountered while processing:
 linux-image-6.1.0-0.deb11.6-amd64
Processing was halted because there were too many errors.
E: Sub-process /usr/bin/dpkg returned an error code (1) in /usr/share/openmediavault/engined/rpc/apt.inc:224
Stack trace:
#0 /usr/share/php/openmediavault/rpc/serviceabstract.inc(620): Engined\Rpc\Apt->Engined\Rpc\{closure}('/tmp/bgstatus25...', '/tmp/bgoutputcF...')
#1 /usr/share/openmediavault/engined/rpc/apt.inc(227): OMV\Rpc\ServiceAbstract->execBgProc(Object(Closure))
#2 [internal function]: Engined\Rpc\Apt->upgrade(NULL, Array)
#3 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)
#4 /usr/share/php/openmediavault/rpc/rpc.inc(86): OMV\Rpc\ServiceAbstract->callMethod('upgrade', NULL, Array)
#5 /usr/sbin/omv-engined(537): OMV\Rpc\Rpc::call('Apt', 'upgrade', NULL, Array, 1)
#6 {main}

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Soma · Mar 7th 2024

Like I said, this is out of my league.

Wait for better answers.

rtibby · Mar 8th 2024

Quote from Soma

What is the output (and post it inside a CODE box, please. It's the </> symbol of the BLUE banner of the posting box)

sudo cat /etc/default/grub

It is complaining about a argument there: iommu.passthrough=1

update-grub exited with return code 127 at DuckDuckGo

Display More

rtibby · Mar 8th 2024

Thank you very much Soma !

I did follow your suggestion and it did work

I commented the line

Code

iommu.passtrough=1

in grub , updated grub /// after that all my updates went through

Thank you

OMV update giving errors.

Upgrade system

chente Mar 2nd 2024

Participate now!

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