Upgrade Debian 9 and 4.x

finas · Feb 13th 2018

I changed the two lines on weakref.py and it did help for a while. But since OMV 4..0.16 I am having these two issues when running apt update and apt upgrade. Openmediavault package is not properly updated.

Python

apt update
Get:1 file:/var/cache/openmediavault/archives  InRelease
Ign:1 file:/var/cache/openmediavault/archives  InRelease
Get:2 file:/var/cache/openmediavault/archives  Release
Ign:2 file:/var/cache/openmediavault/archives  Release
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:4 file:/var/cache/openmediavault/archives  Translation-en_US
Get:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:5 file:/var/cache/openmediavault/archives  Translation-en
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:4 file:/var/cache/openmediavault/archives  Translation-en_US
Get:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:5 file:/var/cache/openmediavault/archives  Translation-en
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:4 file:/var/cache/openmediavault/archives  Translation-en_US
Get:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:5 file:/var/cache/openmediavault/archives  Translation-en
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:4 file:/var/cache/openmediavault/archives  Translation-en_US
Get:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:5 file:/var/cache/openmediavault/archives  Translation-en
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:4 file:/var/cache/openmediavault/archives  Translation-en_US
Get:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:5 file:/var/cache/openmediavault/archives  Translation-en
Get:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:4 file:/var/cache/openmediavault/archives  Translation-en_US
Get:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:5 file:/var/cache/openmediavault/archives  Translation-en
Ign:6 http://ftp.pt.debian.org/debian stretch InRelease
Get:7 http://ftp.pt.debian.org/debian stretch-updates InRelease [91.0 kB]
Hit:8 http://ftp.pt.debian.org/debian stretch Release
Hit:9 http://packages.openmediavault.org/public arrakis InRelease
Get:10 http://security.debian.org stretch/updates InRelease [63.0 kB]
Hit:11 http://packages.openmediavault.org/public arrakis-proposed InRelease
Hit:15 https://openmediavault.github.io/packages arrakis InRelease
Ign:16 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch InRelease
Get:12 http://cdn-fastly.deb.debian.org/debian stretch-backports InRelease [91.8 kB]
Get:14 http://cdn-fastly.deb.debian.org/debian stretch-backports InRelease [91.8 kB]
Ign:17 https://dl.bintray.com/openmediavault-plugin-developers/arrakis-testing stretch InRelease
Hit:18 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch Release
Get:19 http://cdn-fastly.deb.debian.org/debian stretch-backports/main amd64 Packages.diff/Index [27.8 kB]
Get:20 http://cdn-fastly.deb.debian.org/debian stretch-backports/main amd64 Packages 2018-02-13-1426.03.pdiff [486 B]
Hit:21 https://dl.bintray.com/openmediavault-plugin-developers/arrakis-testing stretch Release
Get:20 http://cdn-fastly.deb.debian.org/debian stretch-backports/main amd64 Packages 2018-02-13-1426.03.pdiff [486 B]
Get:23 http://cdn-fastly.deb.debian.org/debian stretch-backports/main amd64 Packages.diff/Index [27.8 kB]
Get:24 http://cdn-fastly.deb.debian.org/debian stretch-backports/main amd64 Packages 2018-02-13-1426.03.pdiff [486 B]
Get:24 http://cdn-fastly.deb.debian.org/debian stretch-backports/main amd64 Packages 2018-02-13-1426.03.pdiff [486 B]
Fetched 302 kB in 0s (320 kB/s)
Traceback (most recent call last):
  File "/usr/sbin/omv-mkaptidx", line 35, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 26, in <module>
    from apt.package import Package
  File "/usr/lib/python3/dist-packages/apt/package.py", line 28, in <module>
    import socket
  File "/usr/lib/python3.5/socket.py", line 53, in <module>
    from enum import IntEnum
  File "/usr/lib/python3.5/enum.py", line 3, in <module>
    from types import MappingProxyType, DynamicClassAttribute
  File "/usr/lib/python3.5/types.py", line 166, in <module>
    import functools as _functools
  File "/usr/lib/python3.5/functools.py", line 23, in <module>
    from weakref import WeakKeyDictionary
  File "/usr/lib/python3.5/weakref.py", line 118
    _atomic_removal(d, wr.key)
                             ^
IndentationError: unindent does not match any outer indentation level
Reading package lists... Done
Building dependency tree
Reading state information... Done
All packages are up to date.
root@sirius:~# apt upgrade
Reading package lists... Done
Building dependency tree
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1 not fully installed or removed.
After this operation, 0 B of additional disk space will be used.
Do you want to continue? [Y/n] y
Setting up openmediavault (4.0.19-1) ...
Updating configuration database ...
Traceback (most recent call last):
  File "/usr/sbin/omv-confdbadm", line 24, in <module>
    import openmediavault.confdbadm
  File "/usr/lib/python3/dist-packages/openmediavault/confdbadm.py", line 25, in <module>
    import argparse
  File "/usr/lib/python3.5/argparse.py", line 87, in <module>
    import copy as _copy
  File "/usr/lib/python3.5/copy.py", line 51, in <module>
    import types
  File "/usr/lib/python3.5/types.py", line 166, in <module>
    import functools as _functools
  File "/usr/lib/python3.5/functools.py", line 23, in <module>
    from weakref import WeakKeyDictionary
  File "/usr/lib/python3.5/weakref.py", line 118
    _atomic_removal(d, wr.key)
                             ^
IndentationError: unindent does not match any outer indentation level
dpkg: error processing package openmediavault (--configure):
 subprocess installed post-installation script returned error exit status 1
Errors were encountered while processing:
 openmediavault
Traceback (most recent call last):
  File "/usr/sbin/omv-mkaptidx", line 35, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 26, in <module>
    from apt.package import Package
  File "/usr/lib/python3/dist-packages/apt/package.py", line 28, in <module>
    import socket
  File "/usr/lib/python3.5/socket.py", line 53, in <module>
    from enum import IntEnum
  File "/usr/lib/python3.5/enum.py", line 3, in <module>
    from types import MappingProxyType, DynamicClassAttribute
  File "/usr/lib/python3.5/types.py", line 166, in <module>
    import functools as _functools
  File "/usr/lib/python3.5/functools.py", line 23, in <module>
    from weakref import WeakKeyDictionary
  File "/usr/lib/python3.5/weakref.py", line 118
    _atomic_removal(d, wr.key)
                             ^
IndentationError: unindent does not match any outer indentation level
E: Sub-process /usr/bin/dpkg returned an error code (1)

Display More

finas · Feb 13th 2018

sorry for the spam

bowe · Feb 18th 2018

Quote from thexma

thank you @Wolf2000,

replace new lines fixed it:

line 109: def remove(wr, selfref=ref(self)): replace with: def remove(wr, selfref=ref(self), _atomic_removal=_remove_dead_weakref):

line 117: _remove_dead_weakref(d, wr.key) replace with: _atomic_removal(d, wr.key)

Changed the lines 109 and 117 and got this instead.
Has someone stumbled over this error?

Display More

Bash

root@openmediavault:/# sudo apt-get update
Get:1 file:/var/cache/openmediavault/archives  InRelease
Ign:1 file:/var/cache/openmediavault/archives  InRelease
Get:2 file:/var/cache/openmediavault/archives  Release
Ign:2 file:/var/cache/openmediavault/archives  Release
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Hit:6 http://packages.openmediavault.org/public arrakis InRelease
Hit:7 https://openmediavault.github.io/packages arrakis InRelease
Hit:8 http://download.mono-project.com/repo/debian stretch InRelease
Ign:9 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch InRelease
Hit:10 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch Release
Ign:11 http://build.openvpn.net/debian/openvpn/stable jessie InRelease
Hit:12 http://cdn-fastly.deb.debian.org/debian stretch-backports InRelease
Hit:14 http://build.openvpn.net/debian/openvpn/stable jessie Release
Traceback (most recent call last):
  File "/usr/sbin/omv-mkaptidx", line 35, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 26, in <module>
    from apt.package import Package
  File "/usr/lib/python3/dist-packages/apt/package.py", line 28, in <module>
    import socket
  File "/usr/lib/python3.5/socket.py", line 53, in <module>
    from enum import IntEnum
  File "/usr/lib/python3.5/enum.py", line 3, in <module>
    from types import MappingProxyType, DynamicClassAttribute
  File "/usr/lib/python3.5/types.py", line 166, in <module>
    import functools as _functools
  File "/usr/lib/python3.5/functools.py", line 23, in <module>
    from weakref import WeakKeyDictionary
  File "/usr/lib/python3.5/weakref.py", line 111
    if self is not None:
                       ^
SyntaxError: invalid syntax
Reading package lists... Done
root@openmediavault:/#

Display More

Wolf2000 · Feb 18th 2018

Hi
Rhombus (#) in the:

Code

cd /etc/apt/sources.list.d/
nano openmediavault-local.list


#deb [trusted=yes] file:/var/cache/openmediavault/archives /

The next update should fit again

Wolf2000 · Feb 18th 2018

Hi

weakref weakref has been changed incorrectly

votdev · Feb 19th 2018

Quote from bowe

Bash

root@openmediavault:/# sudo apt-get update
Get:1 file:/var/cache/openmediavault/archives  InRelease
Ign:1 file:/var/cache/openmediavault/archives  InRelease
Get:2 file:/var/cache/openmediavault/archives  Release
Ign:2 file:/var/cache/openmediavault/archives  Release
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Ign:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Get:3 file:/var/cache/openmediavault/archives  Packages
Get:4 file:/var/cache/openmediavault/archives  Translation-en
Ign:4 file:/var/cache/openmediavault/archives  Translation-en
Get:5 file:/var/cache/openmediavault/archives  Translation-en_US
Ign:5 file:/var/cache/openmediavault/archives  Translation-en_US
Hit:6 http://packages.openmediavault.org/public arrakis InRelease
Hit:7 https://openmediavault.github.io/packages arrakis InRelease
Hit:8 http://download.mono-project.com/repo/debian stretch InRelease
Ign:9 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch InRelease
Hit:10 https://dl.bintray.com/openmediavault-plugin-developers/arrakis stretch Release
Ign:11 http://build.openvpn.net/debian/openvpn/stable jessie InRelease
Hit:12 http://cdn-fastly.deb.debian.org/debian stretch-backports InRelease
Hit:14 http://build.openvpn.net/debian/openvpn/stable jessie Release
Traceback (most recent call last):
  File "/usr/sbin/omv-mkaptidx", line 35, in <module>
    import apt
  File "/usr/lib/python3/dist-packages/apt/__init__.py", line 26, in <module>
    from apt.package import Package
  File "/usr/lib/python3/dist-packages/apt/package.py", line 28, in <module>
    import socket
  File "/usr/lib/python3.5/socket.py", line 53, in <module>
    from enum import IntEnum
  File "/usr/lib/python3.5/enum.py", line 3, in <module>
    from types import MappingProxyType, DynamicClassAttribute
  File "/usr/lib/python3.5/types.py", line 166, in <module>
    import functools as _functools
  File "/usr/lib/python3.5/functools.py", line 23, in <module>
    from weakref import WeakKeyDictionary
  File "/usr/lib/python3.5/weakref.py", line 111
    if self is not None:
                       ^
SyntaxError: invalid syntax
Reading package lists... Done
root@openmediavault:/#

Display More

You have a typo in your changed code.

bowe · Mar 4th 2018

Quote from votdev

You have a typo in your changed code.

Didnt see that, thanks mate! all good now

finas · Mar 11th 2018

I fixed the issue by using a weakref.py from an ubuntu 17.04

Blabla · Apr 18th 2018

Hi, I have OMV 4.1.4, and still got this error after apt-get update:

Code

Hit:23 https://dl.bintray.com/openmediavault-plugin-developers/arrakis-docker stretch Release
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at 0x7f2675ffa730>
Traceback (most recent call last):
  File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at 0x7f2675ffa730>
Traceback (most recent call last):
  File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable

Shouldn't it be fixed? Or do I need to manually edit the line?

ryecoaaron · Apr 18th 2018

If you search the forum, there is a thread about this and how to fix if you want. Otherwise, it is harmless.

bwalker · May 20th 2018

upgrade worked but now NFS is failing.
Error #0:OMV\ExecException: Failed to execute command 'export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin; export LANG=C; systemctl start 'nfs-kernel-server' 2>&1' with exit code '1': A dependency job for nfs-server.service failed. See 'journalctl -xe' for details. in /usr/share/php/openmediavault/system/process.inc:175Stack trace:#0 /usr/share/php/openmediavault/system/systemctl.inc(86): OMV\System\Process->execute(Array, 1)#1 /usr/share/php/openmediavault/system/systemctl.inc(104): OMV\System\SystemCtl->exec('start', NULL, false)#2 /usr/share/openmediavault/engined/module/nfs.inc(71): OMV\System\SystemCtl->enable(true)#3 /usr/share/openmediavault/engined/rpc/config.inc(194): OMVModuleNfs->startService()#4 [internal function]: OMVRpcServiceConfig->applyChanges(Array, Array)#5 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)#6 /usr/share/php/openmediavault/rpc/serviceabstract.inc(149): OMV\Rpc\ServiceAbstract->callMethod('applyChanges', Array, Array)#7 /usr/share/php/openmediavault/rpc/serviceabstract.inc(565): OMV\Rpc\ServiceAbstract->OMV\Rpc\{closure}('/tmp/bgstatus4X...', '/tmp/bgoutputTp...')#8 /usr/share/php/openmediavault/rpc/serviceabstract.inc(159): OMV\Rpc\ServiceAbstract->execBgProc(Object(Closure))#9 /usr/share/openmediavault/engined/rpc/config.inc(213): OMV\Rpc\ServiceAbstract->callMethodBg('applyChanges', Array, Array)#10 [internal function]: OMVRpcServiceConfig->applyChangesBg(Array, Array)#11 /usr/share/php/openmediavault/rpc/serviceabstract.inc(123): call_user_func_array(Array, Array)#12 /usr/share/php/openmediavault/rpc/rpc.inc(86): OMV\Rpc\ServiceAbstract->callMethod('applyChangesBg', Array, Array)#13 /usr/sbin/omv-engined(536): OMV\Rpc\Rpc::call('Config', 'applyChangesBg', Array, Array, 1)#14 {main}

Moreno · May 23rd 2018

Hello,

After the distrib upgrade (omv 3 --> omv4) i have this error (cf screenshot) i have try the solution of @Wolf2000 but no changes, i have an another message error ...

can you help me?

Thanks

EDIT : I don't understand the text of message of wolf, sorry for this message (if you can delete this please delete )

Wolf2000 · May 23rd 2018

I would read everything then you understand it

Gesendet von meinem SM-G935F mit Tapatalk

ransur0t · Jun 15th 2018

@Wolf2000 -- Thanks, the edit of weakref.py squashed the bug.

peterrrjr · Jun 15th 2018

Quote from Blabla

Hi, I have OMV 4.1.4, and still got this error after apt-get update:

Code

Hit:23 https://dl.bintray.com/openmediavault-plugin-developers/arrakis-docker stretch Release
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at 0x7f2675ffa730>
Traceback (most recent call last):
  File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at 0x7f2675ffa730>
Traceback (most recent call last):
  File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable

Shouldn't it be fixed? Or do I need to manually edit the line?

I have just upgrade OMV and I am having the same error. Also, the webgui is toasted. I use debian 9 stretch. I've tried the "reinstall"commmand and no luck. All the shares are working, thank god, but the webgui is not. Is this something related to Debian?
prior to the update, everything was working fine. Now when I try to open the server from the browser, all I get is an "apache" page.

How can I give you more info to get help?

ryecoaaron · Jun 15th 2018

Quote from peterrrjr

I have just upgrade OMV and I am having the same error.

Everyone does until you fix it. It is a bug in the python package from the Debian repos.

Quote from peterrrjr

All the shares are working, thank god, but the webgui is not. Is this something related to Debian?
Now when I try to open the server from the browser, all I get is an "apache" page.

Since OMV uses nginx, this is your problem. remove the apache packages.

peterrrjr · Jun 21st 2018

Quote from ryecoaaron

Everyone does until you fix it. It is a bug in the python package from the Debian repos.
Since OMV uses nginx, this is your problem. remove the apache packages.

I've read a lot about editing this and that. Bot I am newbie. I can acces the server using putty and also remote desktop from windows. What should I do?

ryecoaaron · Jun 21st 2018

Quote from peterrrjr

What should I do?

apt-get purge apache2*

peterrrjr · Jun 22nd 2018

Thanks! That Worked!

ArmandH · Aug 19th 2018

I just did a complete fresh install 4.13 and then upgraded to 4.17 still when running a apt-get update i was getting the weakref.py error, fixed it by editing the file again but i found it very strange that that bug is still there

Participate now!